PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.H00413.1.p
Common NameLOC105973101, MIMGU_mgv1a004514mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family AP2
Protein Properties Length: 524aa    MW: 57267.6 Da    PI: 9.1403
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.H00413.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.45.6e-16160209155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa a+++a+ k++g
  Migut.H00413.1.p 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAACAYDRAAIKFRG 209
                       78*******************......55************************997 PP

2AP240.85.6e-13252299152
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                       s+y+GV+ +k  grW+++   +     +k+++lg f+t+ eAa+a+++a+ k
  Migut.H00413.1.p 252 SKYRGVTLHK-CGRWESRMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIK 299
                       89********.7****995553..1.26**********99*********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-7160209IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-15160218IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-16161217IPR001471AP2/ERF domain
CDDcd000182.49E-12161216No hitNo description
SMARTSM003808.4E-31161223IPR001471AP2/ERF domain
PROSITE profilePS5103216.977161217IPR001471AP2/ERF domain
PfamPF008472.8E-8252299IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-16252312IPR016177DNA-binding domain
CDDcd000181.11E-22252312No hitNo description
Gene3DG3DSA:3.30.730.108.0E-16253310IPR001471AP2/ERF domain
PROSITE profilePS5103215.316253310IPR001471AP2/ERF domain
SMARTSM003803.4E-29253316IPR001471AP2/ERF domain
PRINTSPR003679.5E-6254265IPR001471AP2/ERF domain
PRINTSPR003679.5E-6292312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MWNLNDSPDR RRDDYKESDG FSDDKGKRVG SVSNSSSSAV VIEDGSEEED AERSAVGGGG  60
GGRKRSSSKI FGFSVAHGET GSGSSSSPVT RQFFPVDGSG ITVGGGGGGG GQPNFPSAHW  120
LGVKFCRPSE PHGGAAMGMS AAEVAQPPKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAHAAACAY DRAAIKFRGV EADINFSLDD YQEDLKQMRN LTKDEFVHVL  240
RRQSTGYPRG SSKYRGVTLH KCGRWESRMG QFLGKKYVYL GLFDTEIEAA RAYDKAAIKS  300
NGKDAVTNFD PSIYQEELKS ADCTSSNAEN HNLDLSLGNS PRKAAAGGGG KELMSGLIAN  360
ERHSQFDFDL RSNRGLRPDE YHNNNNNYQK HGGGRREGNY YSSETENLEL RFGKLGELPH  420
VQLPLLNAQH HEVGGGRSNY STEGGKKANS SSVTTTRRSI NNNNNNNNEE QYWQTNNKET  480
TSFANNAAAS SGFQQIIFRQ PPPPPSTTNW LQNCGTHPLI RPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012853594.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotP479271e-124AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A022RV810.0A0A022RV81_ERYGU; Uncharacterized protein
STRINGVIT_07s0031g00220.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-115AP2 family protein